EBRAINS Brain Simulation School 2023

 

Training on modelling neurons, circuits, and cognitive functions

19 – 24 May 2023 | Genoa, Marseille, Palma de Mallorca, Barcelona

 

 

About

© MSC Crociere

  • Registration for on-site participation
  • Admission to all the sessions of the Scientific Programme
  • Private standard cabin
  • Full board service during the cruise (breakfast, lunch, dinner at designated restaurants and free access to the buffet open 20/24h);
  • “Dine & drink pack”: unlimited beverages included during lunch and dinner at designated restaurants. This pack is not valid at buffet or restaurants different by those designated
  • Unlimited internet pack
  • Standard & Covid insurances
  • Free access to all the on-board entertainment, during spare time

The fee does not include travel and any other service not stated above, as well as the €250 deposit fee per cabin, which has to be paid on-board.

Interested registrants will be put on a waiting-list and will be notified of any available tickets in case of cancellation.

No, the event will be held as an on-site event only.

The BrainSim school will start on Friday, 19 May 2023 at 9:00 AM CET and will end in the evening of Tuesday, 23 May 2023, but the cruise will arrive in Genoa at 08:00 in the morning on Wednesday, 24 May.
The programme comprises keynote lectures, interactive sessions, student presentations, tutorials and hands-on sessions.

Registration fee waivers and travel grants are not available for the EBRAINS Brain Simulation School 2023.

The EBRAINS Brain Simulation School 2023 "Training on modelling neurons, circuits, and cognitive functions" will be carried out on the MSC Orchestra Cruise ship, cruising the Mediterranean. The school aims at introducing the participants to the latest achievements and innovations of the digital infrastructure for brain research EBRAINS, created by the Human Brain Project. The school will offer in depth hands-on tutorials on EBRAINS Tools and Services.
The students will be presented with the overview of the EBRAINS research platform, discussed by the leaders of the Human Brain Project, and gain practical skills in using EBRAINS resources to implement cellular and network level computational models, and learn to use EBRAINS Computing Services configure and run simulations, and to visualise/analyse the results.
Through tutorials, interactive sessions and hands-on activities, attendees will learn how to interact with EBRAINS to carry out their own research, to set up and manage a data-driven collaborative project, or to use the EBRAINS platform to interact with internal and external databases.

The target audience of this school are advanced master students, doctoral students and postdoctoral researchers in biomedical and technology sciences, from medicine, biology, psychology, to mathematics, informatics, information technology, physics, chemistry, who would like to get an introduction to the neuroinformatics and computational neuroscience tools available in the EBRAINS Infrastructure. The event is limited to 40 participants.

Prior knowledge needed:

To have the most successful experience at the EBRAINS School on Brain Simulation the organizers recommend that attendees have: 

  • Expertise in python coding and
  • Knowledge of Neuron (beneficial)

 

Registration

Registration is closed.

Covid-19 information

All participant are strongly encouraged but not required to be fully vaccinated against COVID-19. They are no longer required to show proof of vaccination or testing results at embarkation.

However, the organization will provide a standard insurance and a COVID Protection Plan, an insurance policy specifically designed to mitigate COVID-19 risk of transmission on deck. Including comprehensive safety protocols in case of any COVID-19 cases, with onboard medical support and medical centre.

The price of the insurance is included in the registration fee.

 

Registration information

General Admission Ticket*: €500.00


* Registration for on-site participation only


What is covered by the registration fee?

  • Admission to all the sessions of the Scientific Programme
  • Private standard cabin
  • Full board service during the cruise (breakfast, lunch, dinner at designated restaurants and free access to the buffet open 20/24h);
  • “Dine & drink pack”: unlimited beverages included during lunch and dinner at designated restaurants. This pack is not valid at buffet or restaurants different by those designated
  • Unlimited internet pack
  • Standard & Covid insurances
  • Free access to all the on-board entertainment, during spare time

The fee does not include travel to/from Genoa and/or any other service not stated above.

Payment modalities

Payment of registration fees can be made in Euro in the form of

  • Credit or debit card
  • PayPal
  • Stripe
  • Sepa Direct Debit
  • Electronic bank transfers

Confirmation of registration

After the registration has been completed, you will receive a notification via email, including a confirmation of payment and an invoice.

Cancellations and refunds 

The registration is not refundable.

No refunds will be granted for unattended events or early termination of attendance, in case of cancellation of speakers, lack of space in the conference room, or any other incidents during the BrainSim School that are beyond the control of the conference organisers. 

Modification of the programme

The BrainSim School organisers reserve the right to modify the programme. No refunds can be granted in case of cancellation of speakers, lack of space in the conference room, or any other incidents during the School that are beyond the control of the conference organisers. 

Letters of invitation

Letters of invitation cannot be issued for this event.

Cancellation of the BrainSim School

In the event that the School cannot be held or is postponed due to events beyond the control of the conference organisers (force majeure) or due to events that are not attributable to wrongful intent or gross negligence of the conference organisers, the conference organisers cannot be held liable by delegates for any damages, costs, or losses incurred, such as transportation costs, accommodation costs, costs for additional orders, financial losses, etc. 

Logistics
 

Accommodation

The EBRAINS Brain Simulation School 2023 “Training on modelling neurons, circuits, and cognitive functions” will be organized by the Institute of Biophysics of the National Research Council (CNR-IBF) on 19-24 May 2023, on the MSC Orchestra ship cruising over the Mediterranean. On board, each participant will get a smart card with which they can open their private standard cabin. This card will also contain information about the designated restaurant and an individual internet Key access.

Once onboard, an amount €250,00 per cabin will be required by MSC cruise company, as deposit in case anything not included in the full board service will be individually purchased on deck. At the end of the cruise, the passengers will get an invoice with items purchased onboard and, of course, the outstanding balance back.

Breakfast, Lunch and Dinner are included and served in the designated restaurant reported in the smart card; the buffet is also included, serving food throughout the day 20/24h.
Drinks (soft drinks, beer, wine, etc.) at the designated restaurant only are included.
Coffee, juices, and water are available anytime for free at dispensers at the buffet.

All on-board entertainment/activities during spare time are included in the registration fee, with the exception of SPA and wellness services.

Further details on the scientific programme, on-board activities, included services, etc, will be available on the event’s app, which will be provided before the beginning of the School.

 

Travel information

Travel expenses from/to Genoa are not included in the registration fee.

How to get to Genoa        

If you wish to reach Genoa by plane, the city airport is Genoa Cristoforo Colombo Airport (GOA), 7.5 km from the centre. Milan Linate airport (LIN) is 120,4 km, Milan Malpensa (MXP) 137.1 km, Milan Bergamo (BGY) 152.2 km, and Nice (NCE) 161 km away from Genoa.

Genoa is also easily reachable by train, car, coach and ferries. 

https://www.trenitalia.com/it.html

https://www.flixbus.it/ 
 

The event ends on 23 May, but the cruise will reach Genoa on 24 May at 08:00 in the morning.

MSC suggests not to book flights before 15:00 of the same day if your are leaving from Genoa and 17:30 if you are leaving from Milan, as the docking procedures are long and sometimes passports are double checked while disembarking.
 

Venue Address:

Porto di Genova, MSC Terminal, Ponte dei Mille

Picture Gallery

 

Preliminary Scientific Programme

 

This programme will be updated regularly and is subject to change. Times displayed are in CEST/GMT+2/UTC+2.

from 11:00
Embarkation & Lunch
 
15:00 – 15:30


Welcome & Introduction to the School
Michele Migliore | Institute of Biophysics, 
Italian National Research Council (CNR)

 


Session I: EBRAINS Infrastructure for Brain Research
Chair: Michele Migliore 
| Institute of Biophysics, CNR

15:30 – 16:15


The EBRAINS Research Platform
France Nivelle | EBRAINS AISBL


16:15 – 17:30


Break

17:30 – 18:15


Tutorial: The technology behind EBRAINS: the Collaboratory
Paul Chaney 
| EBRAINS AISBL

18:15 – 19:15


The Knowledge Graph and data sharing
Archana Golla | University of Oslo

19:15 – 20:15


Scientific drive: single cell modelling
Michele Migliore 
| Institute of Biophysics, CNR

 

 


Session II: Single Neurons and Networks
Chair: Carmen A. Lupascu | Institute of Biophysics, CNR

08:30 – 10:00


Hands-on: Single cell modelling tools and workflows
(trace analysis, optimization, resources)

Rosanna Migliore & Paola Vitale | Institute of Biophysics, CNR

10:00 – 14:45


Free time
(to work, network, relax or sightseeing, including lunch)

14:45 – 15:30


Tutorial: Modelling with NEURON/Core NEURON + project assignment
Michael Hines | Yale University & Oliver James Lupton | BBP-EPFL

15:30 – 15:45 Coffee break
15:45 – 16:30


Tutorial: Modelling synaptic plasticity + project assignment
Ausra Saudargiene | Lithuanian Unviersity of Health Science

16:30 – 17:30


Tutorial: How to give a talk about your research to funders/press/investors/partners
France Nivelle | EBRAINS AISBL

17:30 – 18:00
Break
 
18:00 – 18:45


Tutorial: Modelling networks with NEST
Johanna Senk | Forschungszentrum Jülich

18:45 – 19:30


Tutorial: ion channels under physiological and pathological conditions
Elisabetta Giacalone Institute of Biophysics, CNR

 

 
Session III: Brain region models
Chair: Luca Leonardo Bologna | Institute of Biophysics, CNR
 

08:30 – 09:30


Tutorial: Mouse and Human Hippocampus CA1 models
Sergio Solinas
 | UNISS
 
09:30 – 10:30
Tutorial: Modelling cortical regions
Johanna Senk | Forschungszentrum Jülich
 

10:30 – 16:30

Free time
(to work, network, relax, or go on an excursion to the city)

 
16:30 – 18:30


Tutorial: The Virtual Brain + project assignment
Marmaduke Woodman 
| Aix-Marseille University
 


18:30 – 18:45

Break
 
18:45 – 20:00


Tutorial: Network modelling with NetPyNE + project assignment
Valeriy Bragin | SUNY

 

 
Session IV: Hands-on: Discussion on assigned projects
Chair: Rosanna Migliore | Institute of Biophysics, CNR
 
08:30 – 09:15
Hands-on: Knowledge Graph database
Archana Golla | University of Oslo
 
09:15 – 10:30
Build your own cell model in NEURON
Carmen A. Lupascu & Luca Leonardo Bologna | Institute of Biophysics, CNR
 
10:30 – 16:30
Free time
(to work, network, relax, or go on an excursion to the city)

 
16:30 – 18:30
Multiscale model of the Cerebellum
Robin De Schepper 
| University of Pavia 

 
18:30 – 18:45
Break
 
18:45 – 20:00
Advanced modelling with NEURON/Core NEURON
Michael Hines | Yale University &
Oliver James Lupton | BBP-EPFL 
 

 

 
Session V: Hands-on: assigned projects
Chair: Paola Vitale | Institute of Biophysics, Italian National Research Council
 
09:00 – 10:30
Hands-on: The Virtual Brain (TVB)
Marmaduke Woodman | Aix-Marseille University
 
10:30 – 10:45
Break
 
10:45 – 11:30
Hands-on: Network modelling with NetPyNE
Valeriy Bragin | SUNY
 
11:30 – 12:30
Hands-on: Modelling synaptic plasticity
Ausra Saudargiene | Lithuanian University of Health Sciences
 
12:30 – 15:00
Lunch Break
 
15:00 – 15:45
Lecture: Modelling cognitive functions
Michele Migliore | Institute of Biophysics, CNR 
 
15:45 – 17:00
Hands-on: Advanced modelling with NEURON/Core NEURON
Michael Hines | Yale University & Oliver James Lupton | BBP-EPFL
 
17:00 – 17:15
Break
 
17:15 – 19:00
Final considerations and discussions on all assignments
All speakers/tutors
 

 

Confirmed Speakers

Michele Migliore | Institute of Biophysics, Italian National Research Council, Italy
Carmen Alina Lupascu | Institute of Biophysics, Italian National Research Council, Italy
Rosanna Migliore | Italian National Research Council, Italy
Elisabetta Giacalone | Italian National Research Council, Italy
Paola Vitale | Italian National Research Council, Italy
Luca Leonardo Bologna | Institute of Biophysics, Italian National Research Council, Italy
Johanna Senk Forschungszentrum Jülich, Germany
Michael Hines Yale University, US
Oliver James Lupton | Blue Brain Project-EPFL, Switzerland
Valeriy Bragin State University of New York, USA
Ausra Saudargiene | Lithuanian University of Health Sciences, Lithuania
Archana Golla | University of Oslo, Norway
Marmaduke Woodman | Aix-Marseille University, France
France Nivelle | EBRAINS AISBL, Belgium
Paul Chaney | EBRAINS AISBL, Belgium
Sergio Solinas | University of Sassari, Italy
Robin De Schepper University of Pavia, Italy

Scientific Chair & Organisers

Michele Migliore | Institute of Biophysics, Italian National Research Council
Alessia Bonafede | Institute of Biophysics, Italian National Research Council
Carmen Alina Lupascu | Institute of Biophysics, Italian National Research Council

 

In cooperation with

 

Venue

The Shaker Lounge at MSC Orchestra cruise ship