Second Specific Grant Agreement (SGA2) Deliverables
(1 Apr 2018 - 31 Mar 2020)

 

SP1 Mouse Brain Organisation

D1.3.1 (D4.1, D15 - SGA2 M12) CDP1 Annual Compound Deliverable Year 1

D1.3.2 (D4.2, D33 - SGA2 M24) CDP1 Annual Compound Deliverable Year 2

D1.6.1 (D7.1, D5 - SGA2 M12) SP1 Mouse Brain Organisation and Interspecies Comparisons: First Data Results package (update on implementation of the DMP - M12)

D1.6.2 (D7.2 D34 - SGA2 M24) SP1 Mouse Brain Organisation and Interspecies Comparisons – Second Data Results package (update on implementation of the DMP - M24)

D1.6.3 (D7.3, D35 - SGA2 M24) SP1 Mouse Brain Organisation and Interspecies Comparisons – Comparative study of cells and microcircuits in the rodent and human brain

 

SP2 Human Brain Organisation

D2.1.1 (D8.1, D57 - SGA2 M12) Comparison of Deep-learning based cytoarchitectonic mapping of cortex in the big brain against gold standard cytoarchitectonic map 1.8 MB

D2.2.1 (D9.1, D58 - SGA2 M12) CDP4 Visuo-Motor Integration - Results for SGA2 Year 1

D2.3.1 (D10.1, D59 - SGA2 M18) Alignment strategy of datasets from TPFM, 3D-PLI, and dMRI

D2.4.1 (D11.1, D60 - SGA2 M24) Software tool for brain structure - phenotype associations

D2.5.1 (D12.1, D61 - SGA2 M24) CDP4 Visuo-Motor Integration - Results for SGA2 Year 2

D2.6.1 (D1.1, D62 - SGA2 M18) Tool for Morphological classification of neurons 

D2.7.1 (D14.1, D16 - SGA2 M24) SGA2 M12) SP2 Human Brain Organisation - Results for SGA2 Year 1

D2.7.2 (D14.2, D36 - SGA2 M24) SP2 Human Brain Organisation - Results for SGA2 Year 2

D2.7.3 (D14.3, D120 - SGA2 M12 ) CDP3 Results for SGA2 Year 1 774.6 KB

D2.7.4 (D14.4, D121 - SGA2 M24) CDP3 Results for SGA2 Year 2

 

SP3 Systems and Cognitive Neuroscience

D3.5.1 (D19.1, D66 - SGA2 M12) An integrated model of superior colliculus and basal ganglia controlling directed action 28.8 MB

D3.6.1 (D20.1, D17 - SGA2 M12) Systems and Cognitive Neuroscience - Results for SGA2 Year 1 690.3 KB

D3.6.2 (D20.2, D38 - SGA2 M24) Systems and Cognitive Neuroscience - Results for SGA2 Year 2

 

SP4 Theoretical Neuroscience 

D4.1.1 (D21.1 D67 - SGA2 M24) Report on models bridging scales

D4.2.1 (D22.1 D68 - SGA2 M24) Report on models of brain circuits

D4.3.1 (D23.1, D69 - SGA2 M24) Report on models of plasticity, learning and memory

D4.4.1 (D24.1, D70 - SGA2 M24) Report on modelling key cognitive processes

D4.4.2 (D24.2, D122 - SGA2 M24) CDP7 Results SGA2

D4.5.1 (D25.1, D71 - SGA2 M24) Report on whole-brain models and comparison to experiments

D4.6.1 (D26.1, D39 - SGA2 M24) SP4 EITN activity report

D4.7.1 (D27.1, D18 - SGA2 M12) SP4 Theoretical Neuroscience models - 1st part

 

SP5 Neuroinformatics Platform

D5.1.1 (D28.1, D72 - SGA2 M9) Completion of SGA1 data/model curation into NIP meta data database

D5.2.1 (D29.1, D73 - SGA2 M12) Release of updated atlas curation supporting material  244.4 KB

D5.3.1 (D30.1, D74 - SGA2 M13) New release of interactive spatial alignment tool  2.2 MB

D5.4.1 (D31.1, D75 - SGA2 M9) First release of software adapted to new Viewer Architecture

D5.5.1 (D32.1, D76 - SGA2 M22) Reproducible scientific software release 2

D5.6.1 (D33.1, D77 - SGA2 M22) Interactive classifier training via the new Viewer 

D5.7.1 (D34.1, D78 - SGA2 M18) Representations of optical imaging data in the Neo data object model

D5.8.1 (D35.1, D19 - SGA2 M12) SP5 Neuroinformatics Platform - Results for SGA2 Year 1 1.1 MB

D5.8.2 (D35.2, D41 - SGA2 M24) SP5 Neuroinformatics Platform - Results for SGA2 Year 2

D5.9.1 (D36.1, D6 - SGA2 M6) Strategy and organization of a High-Level Support Team (HLST)  474.1 KB

D5.10.1 (D80.1, D123 - SGA2 M24) CDP8 Results SGA2

 

SP6 Brain Simulation Platform

D6.1.1 (D37.1, D20 - SGA2 M12) SP6 Annual Compound Deliverable Year 1 1.6 MB

D6.2.1 (D38.1, D21 - SGA2 M12) CDP2 Annual Compound Deliverable Year 1 998.6 KB

D6.3.1 (D39.1, D79 - SGA2 M24) SP6 Annual Compound Deliverable Year 2

D6.4.1 (D40.1, D42 - SGA2 M24) CDP2 Annual Compound Deliverable Year 2

D6.5.1 (D41.1, D80 - SGA2 M24) SP6 Summary Report on Community Outreach

 

SP7 High Performance Analytics and Computing Platform

D7.1.1 (D42.1, D81 - SGA2 M8) HPAC Platform Architecture Specification v1

D7.2.1 (D43.1, D82 - SGA2 M12) Key technologies for fast data access and retrieval 

D7.3.1 (D44.1, D83 - SGA2 M12) Multi-compartment benchmark and validation suites on HPC systems  531.0 KB

D7.4.1 (D45.1, D84 - SGA2 M24) HBP Visualisation Software Catalogue

D7.5.1 (D46.1, D85 - SGA2 M8) HPAC Platform including CEA resources

D7.6.1 (D47.1, D22 - SGA2 M12) SP7 High-Performance Analytics and Computing Platform – Results for SGA2 Year 1

D7.6.2 (D47.2, D43 - SGA2 M24) SP7 High-Performance Analytics and Computing Platform – Results for SGA2 Year 2

 

SP8 Medical Informatics Platform

D8.1.1 (D48.1, D23 - SGA2 M12) SP8 MIP - Results for SGA2 Year 1 552.4 KB

D8.2.1 (D49.1, D31 - SGA2 M24) MIP installed in thirty hospitals

D8.4.1 (D51.1, D21 - SGA2 M20) Reports on disease signatures via sub-type identification, on development and application of methods, and tools

D8.5.1 (D52.1, D4 - SGA1 M6) Software requirements specifications (SRS) - REPORT 1.3 MB

D8.5.2 (D52.2, D8 - SGA2 M12) Μedical Informatics Platform Releases - SOFTWARE & REPORT 1.5 MB

D8.5.3 (D52.3, D9 - SGA2 M20) Μedical Informatics Platform Releases  -  SOFTWARE & REPORT

D8.6.1 (D53.1 D26 - SGA2 M12) CDP6 Results SGA2 Year 1  Implementation for accurate HPC-based screening protocols of neuro-drug candidates 588.9 KB

D8.6.2 (D53.2, D45 - SGA2 M24) CDP6 Results SGA2 Year 2 

D8.7.2 ( D54.2, D124 - SGA2 M18) BIDS Apps for imaging data processing pipelines 

D8.8.2 (D55.2, D125 - SGA2 M22) SEEGMIP database

D8.9.2 (D56.2, D126 - SGA2 M24) Curated and tested brain disease ontologies integrated within application services

D8.10.1 (D81.1, D127 - SGA2 M24) Provide operational MIP infrastructures to UKAACHEN and CHARITE

 

SP9 Neuromorphic Computing Platform

D9.1.1 (D57.1, D90 -  SGA2 M12) Working prototype of a Collaboratory app for graphical model building 618.8 KB

D9.2.1 (D58.1, D91 - SGA2 M12) Software upgrade for BrainScaleS 2 1.5 MB

D9.4.1 (D60.1, D27 - SGA2 M12) CDP5-Biological deep learning: Results for SGA2 Year 1  3.2 MB

D9.4.2 (D60.2, D46 - SGA2 M24) CDP5-Biological deep learning: Results for SGA2 Year 2

D9.5.1 (D61.1, D93 - SGA2 M12) Temporal filtering network  1.7 MB

D9.6.1 (D62.1, D30 - SGA2 M12) SP9 Neuromorphic Computing Platform - Results from SGA2 year 1 4.4 MB

D9.6.2 (D62.2, D47 - SGA2 M24) SP9 Neuromorphic Computing Platform - Results from SGA2 year 2

 

SP10 Neurorobotics Platform

D10.5.1 (D67.1, D28 - SGA2 M12) SP10 Neurorobotics Platform - Results for SGA2 Year 1 2.6 MB

D10.5.2 (D67.2, D48 - SGA2 M24) SP10 Neurorobotics Platform - Results for SGA2 Year 2

 

SP11 Central Services

D11.1.1 (D68.1, D98 - SGA2 M3) Governance handbook 681.4 KB

D11.1.3 (D68.3, D129 - SGA2 M24) SP11 Management and Coordination – Results for SGA2 Year 2

D11.2.10 (D69.10, D131 - SGA2 M7) Gender Action Plan 873.0 KB

D11.3.4 (D70.4, D132 - SGA2 M10) Short Summary of Infrastructure Voucher Programme  752.9 KB

D11.5.1 (D72.1, D107- SGA2 M20) Fourth HBP Curriculum teaching cycle released

 

SP12 Ethics and Society

D12.1.1 (D75.1, D110 - SGA2 M20) SP12-SGA2 Foresight Lab & Researchers Awareness background report 2

D12.2.1 (D76.1, D111 - SGA2 M20) Report on conceptual issues in human identity

D12.3.1 (D77.1, D112 - SGA2 M23) Report on SP12-SGA2 Citizen engagement 

D12.3.2 (D77.2, D113 - SGA2 M23) 2nd Report SP12-SGA2: Lessons from stakeholder engagement and dialogue

D12.4.1 (D78.1, D114 - SGA1 M1) Data Policy Manual  2.6 MB

D12.5.1 (D79.1, D29 - SGA2 M12) SGA2-SP12 M12 reporting (component id: 2326) 

D12.5.2 (D79.2, D49 - SGA2 M24) SGA2 - SP12 M24 reporting (component id: 2328)

D12.5.3 (D79.3, D50 - SGA2 M24) SGA2-SP12 Communication reporting (component id: 2329)

D12.5.4 (D79.4, D51 - SGA2 M24) SP12 Opinion 3 (component id: 1967)